Detailed information of SNP:
|
SNP ID:
sf0333197799(Gbrowse)
Chromosome: chr03 Position: 33197799 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1325 | 98.34% | 1.66% |
| All Indica | 706 | 97.03% | 2.97% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 99.45% | 0.55% |
| Indica II | 151 | 90.73% | 9.27% |
| Indica Intermediate | 194 | 97.42% | 2.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333197799 | C->T | LOC_Os03g58280(LOC_Os03g58280.1) | Synonymous |