Detailed information of SNP:
|
SNP ID:
sf0333211192(Gbrowse)
Chromosome: chr03 Position: 33211192 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 60.52% | 39.48% |
| All Indica | 768 | 31.12% | 68.88% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 352 | 28.41% | 71.59% |
| Indica II | 208 | 27.88% | 72.12% |
| Indica Intermediate | 208 | 38.94% | 61.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333211192 | G->A | INTERGENIC | None |