Detailed information of SNP:
|
SNP ID:
sf0333241101(Gbrowse)
Chromosome: chr03 Position: 33241101 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1329 | 69.38% | 30.62% |
| All Indica | 797 | 99.12% | 0.88% |
| All Japonica | 414 | 6.28% | 93.72% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 286 | 3.15% | 96.85% |
| Tropical Japonica | 71 | 4.23% | 95.77% |
| Japonica Intermediate | 57 | 24.56% | 75.44% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333241101 | C->T | INTERGENIC | None |