Detailed information of SNP:
|
SNP ID:
sf0333293311(Gbrowse)
Chromosome: chr03 Position: 33293311 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 91.35% | 8.65% |
| All Indica | 792 | 92.93% | 7.07% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 207 | 84.54% | 15.46% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333293311 | C->T | LOC_Os03g58450(LOC_Os03g58450.1) | INTRON |