Detailed information of SNP:



SNP ID: sf0333355128(Gbrowse)

Chromosome: chr03

Position: 33355128
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1406 99.00% 1.00%
All Indica799 100.00% 0.00%
All Japonica484 97.11% 2.89%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica323 95.67% 4.33%
Tropical Japonica93 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0333355128 A->C LOC_Os03g58580(LOC_Os03g58580.1) UTR_3_PRIME