Detailed information of SNP:
|
SNP ID:
sf0333499069(Gbrowse)
Chromosome: chr03 Position: 33499069 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 91.87% | 8.13% |
| All Indica | 782 | 85.81% | 14.19% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 362 | 82.32% | 17.68% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 207 | 82.61% | 17.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333499069 | T->A | INTERGENIC | None |