Detailed information of SNP:
|
SNP ID:
sf0333539299(Gbrowse)
Chromosome: chr03 Position: 33539299 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 86.74% | 13.26% |
| All Indica | 798 | 85.71% | 14.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333539299 | T->A | INTERGENIC | None |