Detailed information of SNP:
|
SNP ID:
sf0333579454(Gbrowse)
Chromosome: chr03 Position: 33579454 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 79.13% | 20.87% |
| All Indica | 799 | 72.84% | 27.16% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 76.00% | 24.00% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333579454 | A->G | LOC_Os03g58980(LOC_Os03g58980.1) | Synonymous |