Detailed information of SNP:
|
SNP ID:
sf0333605781(Gbrowse)
Chromosome: chr03 Position: 33605781 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1342 | 85.62% | 14.38% |
| All Indica | 731 | 81.94% | 18.06% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 61 | 6.56% | 93.44% |
| Indica I | 342 | 83.63% | 16.37% |
| Indica II | 209 | 82.78% | 17.22% |
| Indica Intermediate | 180 | 77.78% | 22.22% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333605781 | G->C | LOC_Os03g59050(LOC_Os03g59050.1) | Synonymous |