Detailed information of SNP:



SNP ID: sf0333675557(Gbrowse)

Chromosome: chr03

Position: 33675557
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1414 92.43% 7.57%
All Indica794 87.53% 12.47%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I375 92.80% 7.20%
Indica II213 79.34% 20.66%
Indica Intermediate206 86.41% 13.59%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 80.95% 19.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0333675557 C->T LOC_Os03g59146(LOC_Os03g59146.1) INTRON