Detailed information of SNP:
|
SNP ID:
sf0333717598(Gbrowse)
Chromosome: chr03 Position: 33717598 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 91.04% | 8.96% |
| All Indica | 798 | 92.98% | 7.02% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333717598 | C->T | LOC_Os03g59225(LOC_Os03g59225.1) | UTR_3_PRIME |