Detailed information of SNP:
|
SNP ID:
sf0333753568(Gbrowse)
Chromosome: chr03 Position: 33753568 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 56.72% | 43.28% |
| All Indica | 793 | 29.51% | 70.49% |
| All Japonica | 493 | 93.71% | 6.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 22.31% | 77.69% |
| Indica II | 213 | 34.27% | 65.73% |
| Indica Intermediate | 208 | 37.50% | 62.50% |
| Temperate Japonica | 333 | 94.59% | 5.41% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333753568 | G->A | INTERGENIC | None |