Detailed information of SNP:
|
SNP ID:
sf0333787210(Gbrowse)
Chromosome: chr03 Position: 33787210 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1346 | 63.00% | 37.00% |
| All Indica | 789 | 98.35% | 1.65% |
| All Japonica | 495 | 6.06% | 93.94% |
| Aus | 11 | 45.45% | 54.55% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 206 | 95.15% | 4.85% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333787210 | C->T | INTERGENIC | None |