Detailed information of SNP:
|
SNP ID:
sf0333803740(Gbrowse)
Chromosome: chr03 Position: 33803740 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 57.48% | 42.52% |
| All Indica | 793 | 91.68% | 8.32% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 209 | 84.21% | 15.79% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333803740 | A->G | INTERGENIC | None |