Detailed information of SNP:
|
SNP ID:
sf0333965007(Gbrowse)
Chromosome: chr03 Position: 33965007 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 95.64% | 4.36% |
| All Indica | 797 | 98.62% | 1.38% |
| All Japonica | 478 | 89.75% | 10.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 323 | 87.62% | 12.38% |
| Tropical Japonica | 88 | 96.59% | 3.41% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333965007 | C->T | INTERGENIC | None |