Detailed information of SNP:
|
SNP ID:
sf0334049748(Gbrowse)
Chromosome: chr03 Position: 34049748 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1377 | 96.51% | 3.49% |
| All Indica | 770 | 95.84% | 4.16% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 58 | 77.59% | 22.41% |
| Indica I | 364 | 95.60% | 4.40% |
| Indica II | 204 | 96.08% | 3.92% |
| Indica Intermediate | 202 | 96.04% | 3.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334049748 | A->G | LOC_Os03g59810(LOC_Os03g59810.1) | Synonymous |