Detailed information of SNP:
|
SNP ID:
sf0334052763(Gbrowse)
Chromosome: chr03 Position: 34052763 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1357 | 89.17% | 10.83% |
| All Indica | 746 | 85.52% | 14.48% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 48.39% | 51.61% |
| Indica I | 349 | 93.70% | 6.30% |
| Indica II | 194 | 68.56% | 31.44% |
| Indica Intermediate | 203 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334052763 | T->G | LOC_Os03g59810(LOC_Os03g59810.1) | Synonymous |