Detailed information of SNP:
|
SNP ID:
sf0334060479(Gbrowse)
Chromosome: chr03 Position: 34060479 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 68.25% | 31.75% |
| All Indica | 793 | 52.59% | 47.41% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 20.97% | 79.03% |
| Indica I | 372 | 66.94% | 33.06% |
| Indica II | 212 | 33.96% | 66.04% |
| Indica Intermediate | 209 | 45.93% | 54.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334060479 | G->A | INTERGENIC | None |