Detailed information of SNP:
|
SNP ID:
sf0334061692(Gbrowse)
Chromosome: chr03 Position: 34061692 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1349 | 68.57% | 31.43% |
| All Indica | 749 | 49.27% | 50.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 52 | 46.15% | 53.85% |
| Indica I | 354 | 63.28% | 36.72% |
| Indica II | 194 | 32.99% | 67.01% |
| Indica Intermediate | 201 | 40.30% | 59.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 56.76% | 43.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334061692 | A->G | INTERGENIC | None |