Detailed information of SNP:
|
SNP ID:
sf0334088432(Gbrowse)
Chromosome: chr03 Position: 34088432 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 98.36% | 1.64% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 485 | 95.46% | 4.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 98.15% | 1.85% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334088432 | C->G | LOC_Os03g59894(LOC_Os03g59894.1) | INTRON |