Detailed information of SNP:
|
SNP ID:
sf0334277923(Gbrowse)
Chromosome: chr03 Position: 34277923 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 56.03% | 43.97% |
| All Indica | 797 | 87.70% | 12.30% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334277923 | A->T | LOC_Os03g60279(LOC_Os03g60279.1) | INTRON |