Detailed information of SNP:
|
SNP ID:
sf0334319789(Gbrowse)
Chromosome: chr03 Position: 34319789 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1348 | 93.18% | 6.82% |
| All Indica | 791 | 98.61% | 1.39% |
| All Japonica | 437 | 84.44% | 15.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 206 | 98.06% | 1.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 299 | 78.93% | 21.07% |
| Tropical Japonica | 80 | 98.75% | 1.25% |
| Japonica Intermediate | 58 | 93.10% | 6.90% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334319789 | C->T | INTERGENIC | None |