Detailed information of SNP:
|
SNP ID:
sf0334363810(Gbrowse)
Chromosome: chr03 Position: 34363810 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 95.75% | 4.25% |
| All Indica | 794 | 99.12% | 0.88% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 371 | 98.65% | 1.35% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334363810 | C->T | INTERGENIC | None |