Detailed information of SNP:
|
SNP ID:
sf0334379735(Gbrowse)
Chromosome: chr03 Position: 34379735 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.21% | 46.79% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334379735 | G->T | LOC_Os03g60480(LOC_Os03g60480.1) | INTRON |