Detailed information of SNP:
|
SNP ID:
sf0334382046(Gbrowse)
Chromosome: chr03 Position: 34382046 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 89.04% | 10.96% |
| All Indica | 795 | 88.30% | 11.70% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 21.21% | 78.79% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 209 | 78.47% | 21.53% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334382046 | T->C | INTERGENIC | None |