Detailed information of SNP:
|
SNP ID:
sf0334395193(Gbrowse)
Chromosome: chr03 Position: 34395193 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 89.89% | 10.11% |
| All Indica | 794 | 88.79% | 11.21% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 211 | 80.09% | 19.91% |
| Indica Intermediate | 208 | 80.29% | 19.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334395193 | G->A | INTERGENIC | None |