Detailed information of SNP:
|
SNP ID:
sf0334406103(Gbrowse)
Chromosome: chr03 Position: 34406103 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 88.67% | 11.33% |
| All Indica | 793 | 87.64% | 12.36% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 211 | 78.20% | 21.80% |
| Indica Intermediate | 207 | 77.78% | 22.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334406103 | G->C | LOC_Os03g60550(LOC_Os03g60550.3) | INTRON |
| sf0334406103 | G->C | LOC_Os03g60550(LOC_Os03g60550.2) | INTRON |
| sf0334406103 | G->C | LOC_Os03g60550(LOC_Os03g60550.1) | INTRON |