Detailed information of SNP:
|
SNP ID:
sf0334415024(Gbrowse)
Chromosome: chr03 Position: 34415024 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 54.04% | 45.96% |
| All Indica | 792 | 21.97% | 78.03% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 371 | 8.89% | 91.11% |
| Indica II | 212 | 29.72% | 70.28% |
| Indica Intermediate | 209 | 37.32% | 62.68% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334415024 | T->C | INTERGENIC | None |