Detailed information of SNP:
|
SNP ID:
sf0334506078(Gbrowse)
Chromosome: chr03 Position: 34506078 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 52.19% | 47.81% |
| All Indica | 798 | 19.67% | 80.33% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 3.73% | 96.27% |
| Indica II | 212 | 32.08% | 67.92% |
| Indica Intermediate | 211 | 35.55% | 64.45% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334506078 | C->T | INTERGENIC | None |