Detailed information of SNP:
|
SNP ID:
sf0334541173(Gbrowse)
Chromosome: chr03 Position: 34541173 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 57.66% | 42.34% |
| All Indica | 797 | 97.49% | 2.51% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334541173 | T->C | INTERGENIC | None |