Detailed information of SNP:
|
SNP ID:
sf0334543637(Gbrowse)
Chromosome: chr03 Position: 34543637 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 51.09% | 48.91% |
| All Indica | 752 | 88.56% | 11.44% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 66 | 24.24% | 75.76% |
| Indica I | 344 | 89.53% | 10.47% |
| Indica II | 206 | 88.83% | 11.17% |
| Indica Intermediate | 202 | 86.63% | 13.37% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334543637 | C->A | INTERGENIC | None |