Detailed information of SNP:
|
SNP ID:
sf0334573609(Gbrowse)
Chromosome: chr03 Position: 34573609 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 87.01% | 12.99% |
| All Indica | 796 | 80.40% | 19.60% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 210 | 75.24% | 24.76% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334573609 | A->C | INTERGENIC | None |