Detailed information of SNP:
|
SNP ID:
sf0334574908(Gbrowse)
Chromosome: chr03 Position: 34574908 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 57.69% | 42.31% |
| All Indica | 774 | 98.84% | 1.16% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 204 | 96.08% | 3.92% |
| Indica Intermediate | 196 | 99.49% | 0.51% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334574908 | G->A | INTERGENIC | None |