Detailed information of SNP:
|
SNP ID:
sf0334595470(Gbrowse)
Chromosome: chr03 Position: 34595470 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 59.57% | 40.43% |
| All Indica | 793 | 99.24% | 0.76% |
| All Japonica | 496 | 0.20% | 99.80% |
| Aus | 45 | 37.78% | 62.22% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 207 | 99.03% | 0.97% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 37 | 54.05% | 45.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334595470 | A->G | LOC_Os03g60890(LOC_Os03g60890.1) | UTR_3_PRIME |