Detailed information of SNP:
|
SNP ID:
sf0334619354(Gbrowse)
Chromosome: chr03 Position: 34619354 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 84.32% | 15.68% |
| All Indica | 780 | 73.33% | 26.67% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 370 | 63.78% | 36.22% |
| Indica II | 207 | 93.24% | 6.76% |
| Indica Intermediate | 203 | 70.44% | 29.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334619354 | G->T | INTERGENIC | None |