Detailed information of SNP:
|
SNP ID:
sf0334620492(Gbrowse)
Chromosome: chr03 Position: 34620492 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 86.28% | 13.72% |
| All Indica | 773 | 76.20% | 23.80% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 366 | 66.67% | 33.33% |
| Indica II | 209 | 90.91% | 9.09% |
| Indica Intermediate | 198 | 78.28% | 21.72% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334620492 | C->T | INTERGENIC | None |