Detailed information of SNP:
|
SNP ID:
sf0334626869(Gbrowse)
Chromosome: chr03 Position: 34626869 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.56% | 49.44% |
| All Indica | 798 | 19.67% | 80.33% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 7.20% | 92.80% |
| Indica II | 213 | 28.17% | 71.83% |
| Indica Intermediate | 210 | 33.33% | 66.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334626869 | C->A | LOC_Os03g60950(LOC_Os03g60950.2) | INTRON |
| sf0334626869 | C->A | LOC_Os03g60950(LOC_Os03g60950.1) | UTR_3_PRIME |