Detailed information of SNP:
|
SNP ID:
sf0334630090(Gbrowse)
Chromosome: chr03 Position: 34630090 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 52.62% | 47.38% |
| All Indica | 796 | 82.66% | 17.34% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 208 | 67.79% | 32.21% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334630090 | C->T | LOC_Os03g60960(LOC_Os03g60960.1) | Synonymous |