Detailed information of SNP:
|
SNP ID:
sf0334646169(Gbrowse)
Chromosome: chr03 Position: 34646169 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.76% | 40.24% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334646169 | C->T | LOC_Os03g60992(LOC_Os03g60992.1) | Non-Synonymous SNP |