Detailed information of SNP:
|
SNP ID:
sf0334650622(Gbrowse)
Chromosome: chr03 Position: 34650622 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.37% | 45.63% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334650622 | C->A | INTERGENIC | None |