Detailed information of SNP:
|
SNP ID:
sf0334671095(Gbrowse)
Chromosome: chr03 Position: 34671095 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 56.14% | 43.86% |
| All Indica | 799 | 89.11% | 10.89% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334671095 | C->T | INTERGENIC | None |