Detailed information of SNP:
|
SNP ID:
sf0334671642(Gbrowse)
Chromosome: chr03 Position: 34671642 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 56.36% | 43.64% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334671642 | C->T | INTERGENIC | None |