Detailed information of SNP:
|
SNP ID:
sf0334687134(Gbrowse)
Chromosome: chr03 Position: 34687134 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 92.60% | 7.40% |
| All Indica | 799 | 92.62% | 7.38% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334687134 | C->A | LOC_Os03g61070(LOC_Os03g61070.1) | INTRON |