Detailed information of SNP:
|
SNP ID:
sf0334705446(Gbrowse)
Chromosome: chr03 Position: 34705446 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 51.87% | 48.13% |
| All Indica | 797 | 87.33% | 12.67% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334705446 | C->T | INTERGENIC | None |