Detailed information of SNP:
|
SNP ID:
sf0334725566(Gbrowse)
Chromosome: chr03 Position: 34725566 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 53.72% | 46.28% |
| All Indica | 792 | 21.97% | 78.03% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 372 | 5.11% | 94.89% |
| Indica II | 212 | 35.38% | 64.62% |
| Indica Intermediate | 208 | 38.46% | 61.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334725566 | G->A | INTERGENIC | None |