Detailed information of SNP:
|
SNP ID:
sf0334725641(Gbrowse)
Chromosome: chr03 Position: 34725641 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 54.76% | 45.24% |
| All Indica | 797 | 86.70% | 13.30% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 212 | 83.02% | 16.98% |
| Indica Intermediate | 210 | 73.33% | 26.67% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334725641 | A->G | INTERGENIC | None |