Detailed information of SNP:
|
SNP ID:
sf0334725880(Gbrowse)
Chromosome: chr03 Position: 34725880 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 52.92% | 47.08% |
| All Indica | 799 | 20.78% | 79.22% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 4.53% | 95.47% |
| Indica II | 213 | 34.27% | 65.73% |
| Indica Intermediate | 211 | 36.02% | 63.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334725880 | T->C | INTERGENIC | None |