Detailed information of SNP:
|
SNP ID:
sf0334734567(Gbrowse)
Chromosome: chr03 Position: 34734567 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1281 | 92.97% | 7.03% |
| All Indica | 795 | 98.74% | 1.26% |
| All Japonica | 366 | 83.88% | 16.12% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 241 | 94.19% | 5.81% |
| Tropical Japonica | 71 | 76.06% | 23.94% |
| Japonica Intermediate | 54 | 48.15% | 51.85% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334734567 | G->T | INTERGENIC | None |