Detailed information of SNP:
|
SNP ID:
sf0334739324(Gbrowse)
Chromosome: chr03 Position: 34739324 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 62.55% | 37.45% |
| All Indica | 759 | 39.92% | 60.08% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 48.48% | 51.52% |
| Indica I | 353 | 39.38% | 60.62% |
| Indica II | 201 | 34.83% | 65.17% |
| Indica Intermediate | 205 | 45.85% | 54.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334739324 | C->T | LOC_Os03g61180(LOC_Os03g61180.1) | Non-Synonymous SNP |