Detailed information of SNP:
|
SNP ID:
sf0334741016(Gbrowse)
Chromosome: chr03 Position: 34741016 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 57.66% | 42.34% |
| All Indica | 787 | 91.99% | 8.01% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 372 | 95.70% | 4.30% |
| Indica II | 205 | 86.34% | 13.66% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0334741016 | A->G | LOC_Os03g61180(LOC_Os03g61180.1) | Synonymous |